Running workflows

How to run single workflows

You'll need to install Golang and Reflow if you haven't already.

To run a workflow, use reflow run myworkflow.rf. Some workflows have command line arguments, e.g.

reflow run demux.rf RUNID OUTFOLDER

How to run multiple workflows (batch mode)

First, change into a directory containing a samples.csv and config.json (see [])

reflow runbatch

Debugging workflows

Next, you probably want to check out debugging workflows.